The first genomic resource for the ‘ near threatened’ Neotropical otter Lontra longicaudis (Carnivora: Mustelidae): mitochondrial genome characterisation and insights into phylomitogenomic relationships in the family Mustelidae
Author
Baeza, J. Antonio
Author
Macdonald-Shedd, Austin
Author
Latorre-Cárdenas, María Camila
Author
Griffin, Erin
Author
Gutiérrez-Rodríguez, Carla
text
Journal of Natural History
2023
2023-03-30
57
5 - 8
408
425
http://dx.doi.org/10.6084/m9.figshare.22362999.v1
journal article
10.1080/00222933.2023.2186809
1464-5262
7799804
Table 1. Mitochondrial genome of Lontra longicaudis: arrangement and annotation.| Name | Type | Start | Stop | Strand | Length (bp) | Start | Stop | Anticodon | Continuity |
|---|
| trnf (ttc) | tRNA | 1 | 69 | + | 69 | | | GAA | 0 |
|---|
| rrnS | rRNA | 70 | 1032 | + | 963 | | | | 0 |
|---|
| trnV (gta) | tRNA | 1033 | 1100 | + | 68 | | | UAC | 0 |
|---|
| rrnL | rRNA | 1101 | 2666 | + | 1566 | | | | 0 |
|---|
| trnL2 (tta) | tRNA | 2667 | 2741 | + | 75 | | | UAA | 2 |
|---|
| Nad1 | PCG | 2744 | 3700 | + | 957 | ATG | TAA | | −1 |
|---|
| trnI (atc) | tRNA | 3700 | 3768 | + | 69 | | | GAU | −3 |
|---|
| trnQ (caa) | tRNA | 3766 | 3839 | - | 74 | | | UUG | 1 |
|---|
| trnM (atg) | tRNA | 3841 | 3909 | + | 69 | | | CAU | 0 |
|---|
| Nad2 | PCG | 3910 | 4953 | + | 1044 | ATC | TAG | | −2 |
|---|
| trnW (tga) | tRNA | 4952 | 5019 | + | 68 | | | UCA | 9 |
|---|
| trnA (gca) | tRNA | 5029 | 5097 | - | 69 | | | UGC | 1 |
|---|
| trnN (aac) | tRNA | 5099 | 5171 | - | 73 | | | GUU | 33 |
|---|
| trnC (tgc) | tRNA | 5205 | 5271 | - | 67 | | | GCA | 0 |
|---|
| trnY (tac) | tRNA | 5272 | 5339 | - | 68 | | | GUA | 1 |
|---|
| Cox1 | PCG | 5341 | 6885 | + | 1545 | ATG | TAA | | −3 |
|---|
| trnS2 (tca) | tRNA | 6883 | 6951 | - | 69 | | | UGA | 5 |
|---|
| trnD (gac) | tRNA | 6957 | 7023 | + | 67 | | | GUC | 0 |
|---|
| Cox2 | PCG | 7024 | 7707 | + | 684 | ATG | TAA | | 3 |
|---|
| trnK (aaa) | tRNA | 7711 | 7777 | + | 67 | | | UUU | 1 |
|---|
| Atp8 | PCG | 7779 | 7979 | + | 201 | ATG | TAA | | −40 |
|---|
| Atp6 | PCG | 7940 | 8620 | + | 681 | ATG | TAA | | −1 |
|---|
| Cox3 | PCG | 8620 | 9404 | + | 785 | ATG | TA* | | −1 |
|---|
| trnG (gga) | tRNA | 9404 | 9473 | + | 70 | | | UCC | 0 |
|---|
| Nad3 | PCG | 9474 | 9821 | + | 348 | ATG | TAA | | 0 |
|---|
| trnR (cga) | tRNA | 9822 | 9889 | + | 68 | | | UCG | 0 |
|---|
| Nad4l | PCG | 9890 | 10186 | + | 297 | ATG | TAA | | −7 |
|---|
| Nad4 | PCG | 10180 | 11557 | + | 1378 | ATG | T* | | 0 |
|---|
| trnH (cac) | tRNA | 11558 | 11626 | + | 69 | | | GUG | 0 |
|---|
| trnS1 (agc) | tRNA | 11627 | 11688 | + | 62 | | | CGU | 0 |
|---|
| trnL1 (cta) | tRNA | 11689 | 11758 | + | 70 | | | UAG | −9 |
|---|
| Nad5 | PCG | 11750 | 13579 | + | 1830 | ATA | TAA | | −17 |
|---|
| Nad6 | PCG | 13563 | 14093 | - | 531 | ATG | TAA | | 3 |
|---|
| trnE (gaa) | tRNA | 14097 | 14165 | - | 69 | | | UUC | 4 |
|---|
| Cob | PCG | 14170 | 15309 | + | 1140 | ATG | AGA | | 0 |
|---|
| trnT (aca) | tRNA | 15310 | 15377 | + | 68 | | | UGU | −1 |
|---|
| trnP (cca) | tRNA | 15377 | 15442 | - | 66 | | | UGG | 0 |
|---|
| CR | | 15443 | 16436 | | 994 | | | | 0 |
|---|