Mobilization of storage lipid reserve and expression analysis of lipase and lipoxygenase genes in rice (Oryza sativa var. Pusa Basmati 1) bran during germination Author Sinha, Kshitija * & National Agri-Food Biotechnology Institute (NABI), Plant Tissue Culture and Genetic Engineering, Mohali, 140306, Punjab, India Author Kaur, Ranjeet Author Singh, Nishu Author Kaur, Sumandeep Author Rishi, Vikas Author Bhunia, Rupam Kumar text Phytochemistry 2020 112538 2020-12-31 180 1 12 http://dx.doi.org/10.1016/j.phytochem.2020.112538 journal article 10.1016/j.phytochem.2020.112538 1873-3700 8292656
Table 2 Detailed information on the expression profiles (FPKM) of the 16 candidate LOX genes in rice developing grains, endosperm and leaves identified from RGAP database. DAP, Days after pollination; FPKM, fragments per kilo base per million mapped reads. # Active sites were identified using PROSITE (Sigrist et al., 2013).
NameLocusGrain (5 DAP)Grain (10 DAP)Endosperm (25 DAP)Leaves (20 DAP)LOX Active site #
OsLOX1LOC_Os03g493806.30.53.45.3Yes
OsLOX2LOC_Os03g52860005.90.1Yes
OsLOX3LOC_Os03g493506.80.910.80.8Yes
OsLOX4LOC_Os03g492600.30.20.50.19Yes
OsLOX5LOC_Os02g101200.200702.7Yes
OsLOX6LOC_Os02g197900000Yes
OsLOX7LOC_Os03g082203.40.82.316.6Yes
OsLOX8LOC_Os04g3743010.01.20.88.4Yes
OsLOX9LOC_Os05g238802.40.10.0825.9Yes
OsLOX10LOC_Os06g044200000Yes
OsLOX11LOC_Os08g398400005.9Yes
OsLOX12LOC_Os08g398500007.5Yes
OsLOX13LOC_Os11g367190000Yes
OsLOX14LOC_Os12g372602.000277.4Yes
OsLOX15LOC_Os12g3732000015.5Yes
OsLOX16LOC_Os12g373500.50080.9Yes