Complete mitochondrial genome of the terrestrial isopod Cubaris murina Brandt, 1833: new family gene order and novel tRNA secondary structures
Author
Hwang, Hee-seung
Research Institute of EcoScience, Ewha Womans University, Seoul, Republic of Korea;
Author
Shin, Jiyeong
Division of EcoCreative, Ewha Womans University, Seoul, Republic of Korea;
Author
Jung, Jongwoo
Division of EcoCreative, Ewha Womans University, Seoul, Republic of Korea; & Department of Science Education, Ewha Womans University, Seoul, Republic of Korea;
Author
Baeza, J. Antonio
Department of Biological Sciences, Clemson University, Clemson, SC, USA; & Smithsonian Marine Station, Smithsonian Institution, Fort Pierce, FL, USA; & Departamento de Biología Marina, Facultad de Ciencias del Mar, Universidad Católica del Norte, Coquimbo, Chile
text
Journal of Natural History
2023
2024-09-03
58
33 - 36
1293
1306
http://dx.doi.org/10.1080/00222933.2023.2258587
journal article
10.1080/00222933.2023.2258587
1464-5262
13758263
Table 1. Arrangement and annotation of the mitochondrial genome of Cubaris murina. | | | | | Length | | | | |
|---|
| Name | Type | Start | Stop | Strand | (bp) | Start | Stop | Inter-genic space | Overlap |
|---|
| Cox1 | Coding | 1 | 1536 | + | 1536 | ATG | TAA | 1 | |
|---|
| trnL2(tta) | tRNA | 1538 | 1598 | + | 61 | | | 48 | |
|---|
| Cox2 | Coding | 1647 | 2282 | + | 636 | ATA | TAG | | 2 |
|---|
| trnK(aaa) | tRNA | 2281 | 2336 | + | 56 | | | | 8 |
|---|
| trnD(gac) | tRNA | 2329 | 2403 | + | 75 | | | | 17 |
|---|
| atp8 | Coding | 2387 | 2533 | + | 147 | ATA | TAA | | 4 |
|---|
| atp6 | Coding | 2530 | 3192 | + | 663 | ATA | TAA | 2 | |
|---|
| Cox3 | Coding | 3195 | 3989 | + | 795 | ATG | TAG | | 2 |
|---|
| trnR(cga) | tRNA | 3988 | 4055 | + | 68 | | | 55 | |
|---|
| nad3 | Coding | 4111 | 4407 | + | 297 | ATA | TAA | | 9 |
|---|
| trnA(gca) | tRNA | 4399 | 4446 | + | 48 | | | | 8 |
|---|
| nad1 CR putative | Coding | 4439 5219 | 5218 5360 | − | 780 142 | ATG | TAG | | 14 |
|---|
| NCR1 | tRNA | 5361 | 5429 | + | 69 | | | | 17 |
|---|
| rrnS | rRNA | 5413 | 6139 | + | 727 | | | 48 | |
|---|
| trnW(tga) | tRNA | 6188 | 6244 | + | 57 | | | | 7 |
|---|
| trnS1(aga) | tRNA | 6238 | 6296 | − | 59 | | | | |
|---|
| NCR2 | | 6297 | 6666 | | 370 | | | | |
|---|
| trnL1(cta) | tRNA | 6667 | 6731 | − | 65 | | | 29 | |
|---|
| cob | Coding | 6759 | 7907 | − | 1,149 | ATA | TAG | 38 | |
|---|
| trnT(aca) | tRNA | 7946 | 8017 | − | 72 | | | 29 | |
|---|
| nad5 | Coding | 8047 | 9648 | + | 1,602 | ATG | TAG | | 3 |
|---|
| trnF(ttc) | tRNA | 9646 | 9707 | + | 62 | | | | 15 |
|---|
| trnH(cac) | tRNA | 9693 | 9758 | − | 66 | | | | 23 |
|---|
| nad4 | Coding | 9736 | 11,082 | − | 1,312 | ATA | TAA | 13 | |
|---|
| nad4L | Coding | 11,096 | 11,374 | − | 279 | ATA | TAA | | 13 |
|---|
| trnP(cca) | tRNA | 11,362 | 11,422 | − | 61 | | | 25 | |
|---|
| nad6 | Coding | 11,448 | 11,903 | + | 456 | ATA | TAG | | 2 |
|---|
| trnS2(tca) | tRNA | 11,902 | 11,962 | + | 61 | | | 17 | |
|---|
| rrnL | rRNA | 11,980 | 12,549 | − | 570 | | | | |
|---|
| NCR3 | | 12,550 | 12,753 | | 204 | | | | |
|---|
| trnE(gaa) | tRNA | 12,754 | 12,812 | − | 59 | | | | |
|---|
| NCR4 | | 12,813 | 12,950 | | 138 | | | | |
|---|
| trnV(gta) | tRNA | 12,951 | 13,019 | − | 69 | | | | 5 |
|---|
| trnQ(caa) | tRNA | 13,015 | 13,077 | − | 63 | | | | 6 |
|---|
| trnM(atg) | tRNA | 13,072 | 13,141 | + | 70 | | | 25 | |
|---|
| nad2 | Coding | 13,167 | 14,123 | + | 978 | ATA | TAG | | 15 |
|---|
| trnC(tgc) | tRNA | 14,109 | 14,158 | − | 50 | | | | |
|---|
| trnY(tac) | tRNA | 14,159 | 14,205 | − | 47 | | | 7 | |
|---|