| Cantharellus addaiensis | BB 98.033 TYPE | Tanzania | KF294667 | JX192992 |
| Cantharellus afrocibarius | BB 96.235 TYPE | Zambia | KF294668 | JX192993 |
| Cantharellus albidolutescens | BB 08.070 TYPE | Madagascar | KF294646 | JX192982 |
| Cantharellus alborufescens | BB 12.075 | Italy | KX929161 | KX907243 |
| BB 12.076 | Italy | KX907222 | KX907244 |
| Cantharellus altipes | BB 07.019 TYPE | USA | KF294627 | GQ914939 |
| Cantharellus ambohitantelyensis | BB 08.336 TYPE | Madagascar | KF294656 | JX192989 |
| Cantharellus amethysteus | AH44796 TYPE | Spain | KR677550 | KX828819 |
| Cantharellus appalachiensis | BB 07.123 | USA | KF294635 | GQ914979 |
| Cantharellus camphoratus | TENN:F-38025 TYPE | Canada | KX896788 | - |
| Cantharellus cerinoalbus | AV 06.051 TYPE | Malaysia | KF294663 | - |
| Cantharellus cibarius | BIO10986 TYPE | Sweden | KR677539 | KX828823 |
| Cantharellus cinnabarinus | BB 07.001 TYPE | USA | KF294624 | GQ914985 |
| Cantharellus coccolobae | 1065/RC 11.25 TYPE | Guadeloupe | KX857089 | KX857021 |
| Cantharellus congolensis | BB 98.039 | Tanzania | KF294609 | JX193015 |
| BB 98.058 | Tanzania | KF294673 | JX192996 |
| Cantharellus corallinus | JJ MO-Canth-2 TYPE | USA | KX896776 | KX857031 |
| Cantharellus decolorans | BB 08.278 TYPE | Madagascar | KF294654 | GQ914968 |
| Cantharellus enelensis | 13.08.21.av02 TYPE | Canada | KX592712 | - |
| Cantharellus ferruginascens | BB 07.283 | Slovakia | KF294638 | GQ914952 |
| Cantharellus fistulosus | DT 43 TYPE | Tanzania | KF294674 | JX192992 |
| Cantharellus flavolateritius | Halling 6252 | USA | MT371334 | - |
| JJ/NC-CANT-2 | USA | KX896783 | KX857027 |
| Cantharellus flavus | C066WI TYPE | USA | JX030437 | - |
| Cantharellus formosus | SAR220712 | Canada | KR677553 | KX828830 |
| Cantharellus friesii | AH44798 | Spain | KR677522 | KX828831 |
| Cantharellus garnierii | RF32 PC TYPE | New Caledonia | AY392767 | - |
| Cantharellus gracilis | BB 98.234 TYPE | Tanzania | KF294612 | JX192970 |
| Cantharellus guyanensis | 1501/MRG07 | Guyane | KX857094 | KX857060 |
| 1517/MR | Guyane | KX857095 | KX857061 |
| Cantharellus hainanensis | N.K. Zeng2289 TYPE | China | KY407524 | KY407536 |
| Cantharellus heinemannianus | BB 96.307 TYPE | Zambia | KF294665 | - |
| Cantharellus humidicolus | BB 98.036 TYPE | Tanzania | KF294666 | JX193005 |
| Cantharellus ibityensis | BB 08.196 TYPE | Madagascar | KF294650 | GQ914980 |
| Cantharellus isabellinus var. parvisporus | BB 98.020 TYPE | Tanzania | KF294614 | JX192972 |
| Cantharellus iuventateviridis | BP Looney 523 TYPE | USA | NG_060428 | KX857047 |
| Cantharellus lateritius | TJ Baroni 8059F | USA | MT371335 | - |
| TJ Baroni 8117L | USA | MT371336 | - |
| BB 07.025 TYPE | USA | KF294633 | GQ914959 |
| Cantharellus lewisii | BB 07.003 TYPE | USA | JN940597 | GQ914962 |
| Cantharellus lilacinopruinatus | BB 07.221 | Slovakia | KF294637 | GQ914951 |
| Cantharellus miniatescens | 1683/TH9870 | Cameroon | KX857108 | KX857079 |
| Cantharellus minor | BB 07.002 | USA | KF294625 | JX192978 |
| BB 07.057 | USA | KF294632 | JX192979 |
| Cantharellus miomboensis | BB 98.021 TYPE | Tanzania | KF294613 | JX192971 |
| Cantharellus pallens | BB 09.441 | Italy | KX907218 | KX907240 |
| BB 12.082 | Italy | KX857092 | KX857036 |
| Cantharellus parvoflavus | Montoya 5423 TYPE | Mexico | MT371337 | MT449706 |
| Herrera 204 | Mexico | MT371338 | MT449707 |
| Herrera 229 | Mexico | MT371339 | MT449708 |
| Cantharellus paucifurcatus | BB 08.320 TYPE | Madagascar | KF294655 | JX192988 |
| Cantharellus phasmatis | C073WI TYPE | USA | JX030426 | - |
| Cantharellus platyphyllus | BB 98.126 TYPE | Tanzania | KF294620 | JX192975 |
| Cantharellus platyphyllus subsp. bojeriensis | BB 08.160 | Madagascar | KF294648 | JX192984 |
| Cantharellus pseudominimus | JV 00.663 | France | KF294657 | JX192991 |
| Cantharellus quercophilus | BB 07.097 TYPE | USA | KF294644 | JX192981 |
| Cantharellus romagnesianus | AH44218 | Spain | KX828807 | KX828836 |
| Cantharellus roseofagetorum | AH44789 TYPE | Georgia | NG_058962 | KX828839 |
| Cantharellus sebosus | BB 08.234 TYPE | Madagascar | KF294652 | JX192986 |
| Cantharellus spectaculus | C081WI TYPE | USA | JX030421 | JX030414 |
| Cantharellus splendens | BB 96.306 TYPE | Zambia | KF294670 | - |
| Cantharellus subalbidus | BB 13.014B | USA | KX896782 | KX857038 |
| Cantharellus subamethysteus | DS 06.218 TYPE | Malaysia | KF294664 | - |
| Cantharellus subcyanoxanthus | BB 00.1137 TYPE | Madagascar | - | JX192990 |
| Cantharellus subincarnatus subsp. rubrosalmoneus | BB 06.080 TYPE | Madagascar | KF294601 | JX192962 |
| Cantharellus symoensii | BB 98.113 TYPE | Tanzania | KF294619 | JX192974 |
| Cantharellus tabernensis | Herrera 120 | Mexico | MT371340 | MT449709 |
| Herrera 121 | Mexico | MT371341 | MT449710 |
| BB 07.056 TYPE | USA | KF294631 | GQ914974 |
| Cantharellus tanzanicus | BB 98.040 TYPE | Tanzania | KF294622 | JX192977 |
| Cantharellus tenuithrix | BB 07.125 TYPE | USA | JN940600 | GQ914947 |
| Cantharellus texensis | BB 07.018 TYPE | USA | KF294626 | GQ914988 |
| Cantharellus tomentosus | BB 98.060 TYPE | Tanzania | KF294672 | JX192995 |
| Cantharellus veraecrucis | Herrera 142 | Mexico | MT371342 | - |
| Herrera 58 | Mexico | MT371343 | MT449711 |
| Bandala 4505 TYPE | Mexico | MT371344 | MT449712 |
| Cantharellus violaceovinosus | Corona 648 TYPE | Mexico | NG_064465 | MF616521 |
| Craterellus confluens | Botteri 6 TYPE | Mexico | MT371345 | - |
| Craterellus tubaeformis | BB 07.293 | Slovakia | KF294640 | GQ914989 |
| Hydnum repandum | BB 07.341 | Slovakia | KF294643 | JX192980 |