Mitochondrial phvlogenomics of bumblebees * Bombus % Hvmenoptera: Apidae): a tale of structural variation * shiħs in selection constraints * and tree discordance Author Gonçalves, Leonardo Tresoldi Departamento de Genética * Universidade Federal do Rio Grande do ºul * Porto Alegre * Rº * Brazil & Programa de Pós-Graduação em Genética e Biologia Molecular * Universidade Federal do Rio Grande do ºul * Porto Alegre * Rº * Brazil tresoldigoncalves@gmail.com Author Françoso, Elaine Centre for Ecologv * Evolution and Behaviour * Department of Biological ºciences * ºchool of Life ºciences and the Environment * Roval Hollowav Universitv of London * Egham * TW 20 0 EX * UK tresoldigoncalves@gmail.com Author Deprá, Maríndia Departamento de Genética * Universidade Federal do Rio Grande do ºul * Porto Alegre * Rº * Brazil & Programa de Pós-Graduação em Genética e Biologia Molecular * Universidade Federal do Rio Grande do ºul * Porto Alegre * Rº * Brazil tresoldigoncalves@gmail.com text Zoological Journal of the Linnean Society 2024 2023-11-24 202 1 1 15 https://doi.org/10.1093/zoolinnean/zlad178 journal article 10.1093/zoolinnean/zlad178 0024-4082 14444066
Table 1. References and GenBank accession numbers for the mitochondrial genomes used in the analyses. Mitochondrial genomes that were assembled in this study are marked with an asterisk.
SpeciesSize (bp)Dataset ReferenceAcc. number*
Bombus (Alpigenobombus) Skorikov, 1914
B. breviceps Smith, 185216 743Zhao et al. (2017b)MF478986
B. kashmirensis Friese, 190916 793Zhao et al. (2019)MH998261
Bombus (Alpinobombus) Skorikov, 1914
B. balteatus Dahlbom, 183218 099Christmas et al. (2022)BK063618*
B. polaris Curtis, 183518 658Sun et al. (2021)BK063644*
Bombus (Bombias) Robertson, 1903
B. confusus Schenck, 185916 832Sun et al. (2021)BK063651*
B. nevadensis Cresson, 187418 238Bossert et al. (2019)BK063630*
Bombus (Bombus) Latreille, 1802
B. cryptarum florilegus Panfilov, 195615 763Takahashi et al. (2018b)AP018158
B. hypocrita sapporoensis Cockerell, 191115 468Takahashi et al. (2016)AP017370
B. ignitus Smith, 186916 434Cha et al. (2007)DQ870926
B. lantschouensis Vogt, 190816 153Zhao et al. (2021)BK063627*
B. longipennis Friese, 191817 711Zhou et al. (2021a)MW741884
B. lucorum (Linnaeus, 1761)18 990Lin et al. (2019a)BK063625*
B. terrestris (Linnaeus, 1758)24 708Crowley et al. (2023c)OU342939
B. terrestris canariensis Pérez, 189517 300Ruiz et al. (2021)MW959771
B. terrestris lusitanicus Krüger, 195617 049Cejas et al. (2020)MK570128
B. terrestris terrestris (Linnaeus, 1758) B. terricola Kirby, 183717 232 20 452Cejas et al. (2020) Kent et al. (2018)MK570129 BK063649*
Bombus (Cullumanobombus) Vogt, 1911 B. cullumanus (Kirby, 1802) B. griseocollis (DeGeer, 1773)16 792 17 587Sun et al. (2021) Grab et al. (2019)BK063614 BK063647* *
Bombus (Kallobombus) Dalla Torre, 1880 B. soroeensis (Fabricius, 1777) Bombus (Megabombus) Dalla Torre, 188016 177Sun et al. (2021)BK063633*
B. consobrinus Dahlbom, 1832 B. hortorum (Linnaeus, 1761) B. supremus Morawitz, 1887 B. trifasciatus Smith, 1852 B. ussurensis Radoszkowski, 1877 Bombus (Melanobombus) Dalla Torre, 188017 966 21 620 19 280 18 681 15 807Zhao et al. (2017a) Crowley et al. (2021) Zhao et al. (2021) Lin et al. (2019a) Yoon et al. (2020)MF995069 BK063648 BK063638 BK063641 BK063640* * * *
B. ladakhensis Richards, 1928 B. lapidarius (Linnaeus, 1758) B. pyrosoma Morawitz, 189015 877 17 817 18 897Zhao et al. (2021) Tang et al. (2015) Zhao et al. (2019)BK063629 KT164641 MH998260*
B. sichelii Radoszkowski, 186017 165Lin et al. (2019a)BK063635*
Bombus (Mendacibombus) Skorikov, 1914
B. convexus Wang, 187919 996Lin et al. (2019a)BK063615*
B. superbus (Tkalcu, 1968)16 855Sun et al. (2021)BK063632*
B. waltoni Cockerell, 191019 349Lin et al. (2019b)MK252702
Bombus (Orientalibombus) Richards, 1929
B. haemorrhoidalis Smith, 185216 595Sun et al. (2021)BK063620*
Bombus (Psithyrus) Lepeletier, 1832
B. bohemicus Seidl, 183720 582Lin et al. (2019a)BK063613*
B. campestris (Panzer, 1801)24 740Crowley et al. (2023e)HG995151
B. citrinus (Smith, 1854)17 692Bossert et al. (2019)BK063616*
B. skorikovi (Popov, 1927)24 179Sun et al. (2021)BK063634*
Bombus (Pyrobombus) Dalla Torre, 1880
B. bifarius Cresson, 187820 026Heraghty et al. (2020)BK063617*
B. hypnorum (Linnaeus, 1758)15 614Crowley et al. (2023d)OU427032
B. impatiens Cresson, 186317 161Sadd et al. (2015)BK063623*
B. lepidus Skorikov, 191219 530Zhao et al. (2021)BK063626*
B. melanopygus Nylander, 184818 141Tian et al. (2019)BK063624*
B. perplexus Cresson, 186317 226Grab et al. (2019)BK063646*
B. picipes Richards, 193418 017Sun et al. (2021)BK063636*
B. pratorum (Linnaeus, 1761)21 229Crowley et al. (2023b)BK063650*
B. sylvicola Kirby, 183720 535Christmas et al. (2021)BK063612*
B. vancouverensis nearcticus Handlirsch, 188820 554Heraghty et al. (2020)BK063643*
B. vancouverensis vancouverensis Cresson, 187817 062Ghisbain et al. (2020)BK063642*
B. vosnesenskii Radoszkowski, 186218 652Heraghty et al. (2020)BK063639*
Bombus (Sibiricobombus) Vogt, 1911
B. asiaticus Morawitz, 187519 752Zhao et al. (2019)MH998259
B. sibiricus (Fabricius, 1781)20 048Zhao et al. (2019)MH998258
Bombus (Subterraneobombus) Vogt, 1911
B. difficillimus Skorikov, 191216 810Sun et al. (2021)BK063619*
B. melanurus Lepeletier, 183517 173Zhao et al. (2021)BK063631*
B. personatus Smith, 187915 892Zhao et al. (2021)BK063645*
Bombus (Ŋoracobombus) Dalla Torre, 1880
B. fervidus (Fabricius, 1798)16 440Grab et al. (2019)BK063621*
B. filchnerae Vogt, 190816 804Zhou et al. (2021b)MW741886
B. impetuosus Smith, 187116 973Lin et al. (2019a)BK063622*
B. laesus Morawitz, 187515 712Lin et al. (2019a)BK063628*
B. opulentus Smith, 186118 218Sun et al. (2021)BK063637*
B. pascuorum (Scopoli, 1763)21 904Crowley et al. (2023a)HG995285
Apis Linnaeus, 1758
A. cerana Fabricius, 179315 895Tan et al. (2011)NC_014295
A. dorsata Fabricius, 179315 892Chhakchhuak et al. (2016)NC_037709
A. florea Fabricius, 178717 694Wang et al. (2013)NC_021401
A. mellifera sahariensis Baldensperger, 193216 569Haddad et al. (2017)NC_035883
A. nigrocincta Smith, 186015 855Takahashi et al. (2018a)NC_038114
A. nuluensis Tingek, Koeniger and Koeniger, 199615 843Eimanifar et al. (2017)NC_036235
Melipona Illiger, 1806
M. bicolor Lepeletier, 183615 001Silvestre et al. (2008)AF466146
M. fasciculata Smith, 185414 753UnpublishedMH680930
M. scutellaris Latreille, 181114 862Pereira et al. (2016)NC_026198