| LAGOON GOBIES (Gobiopsis -lineage) (10) | Istigobius ornatus | MG921194.1 |
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| Acentrogobius viridipunctatus | KU944918.1 |
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| Exyrias puntang | KX223899.1 |
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| Cabillus tongarevae | JQ431504.1 |
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| Afurcagobius tamarensis | KJ669376.1 |
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| Arcygobius baliurus | JX193734.1 |
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| Oplopomus oplopomus | KP194727.1 |
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| Hazeus sp. | KY867546.1 |
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| Istigobius decoratus | JF493692.1 |
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| Favonigobius reichei | KY676015.1 |
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| SILT SHRIMP GOBIES (Cryptocentrus -lineage) (8) | Psilogobius mainlandi | MG816721.1 |
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| Stonogobiops nematodes | KU176408.1 |
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| Cryptocentrus cyanotaenia | FJ583286.1 |
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| Cryptocentroides sp. | KX139518.1 |
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| Cryptocentroides sp. | KX139518.1 |
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| Mahidolia mystacina | KX223919.1 |
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| Myersina filifer | KY371776.1 |
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| Lotilia graciliosa | MH160743.1 |
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| INSHORE GOBIES (Glossogobius -lineage) (5) | Psammogobius biocellatus | KU944883.1 |
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| Bathygobius soporator | HM775951.1 |
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| Bathygobius curacao | HM775921.1 |
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| Bathygobius cocosensis | JQ431481.1 |
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| Glossogobius giuris | JX983309.1 |
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| AFRICAN GOBIES (Gobius -lineage) (4) | Caffrogobius caffer | JF492999.1 |
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| Hetereleotris sp. | MF123921.1 |
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| Coryogalops anomolus | HQ909459.1 |
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| Coryogalops sp. | KX139520.1 |
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| FLAPHEADED GOBIES (Callogobius -lineage) (1) | Callogobius sclateri | JQ431514.1 |
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| Pomatoschistus - lineage (1) | Pomatoschistus minutus (Out group) | KX586222.1 |
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