<document tableId="DF1B661C7568946AF08522E8FC026BA9" sourceDocId="FFF4FFFA75649466F0042747FFB36E6E" ID-DOI="http://doi.org/10.5281/zenodo.13891788" ID-Zenodo-Dep="13891788" captionStart="Table 5" checkinTime="1725647751554" checkinUser="karina" pageId="12" pageNumber="281" updateTime="1728068767267" updateUser="ExternalLinkService"><mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
    <mods:titleInfo>
        <mods:title>A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes</mods:title>
    </mods:titleInfo>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Li, Ming</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China</mods:affiliation>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Hu, Guangran</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China &amp; College of Advanced Agricultural Sciences * University of Chinese Academy of Sciences * Beijing 100049 * China</mods:affiliation>
        <mods:nameIdentifier type="email">gtwang@ihb.&amp;pponce@ucm.es</mods:nameIdentifier>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Zhao, Weishan</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China &amp; College of Advanced Agricultural Sciences * University of Chinese Academy of Sciences * Beijing 100049 * China</mods:affiliation>
        <mods:nameIdentifier type="email">gtwang@ihb.&amp;pponce@ucm.es</mods:nameIdentifier>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Zou, Hong</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China</mods:affiliation>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Li, Wenxiang</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China</mods:affiliation>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Wu, Shangong</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China</mods:affiliation>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Wang, Guitang</mods:namePart>
        <mods:affiliation>State Key Laboratory of Freshwater Ecology and Biotechnology * and Key Laboratory of Aquaculture Disease Control * Ministry of Agriculture * Institute of Hydrobiology * Chinese Academy of Sciences * Wuhan 430072 * China</mods:affiliation>
        <mods:nameIdentifier type="email">gtwang@ihb. ac.cn</mods:nameIdentifier>
    </mods:name>
    <mods:name type="personal">
        <mods:role>
            <mods:roleTerm>Author</mods:roleTerm>
        </mods:role>
        <mods:namePart>Ponce-Gordo, Francisco</mods:namePart>
        <mods:affiliation>Departamento de Microbiología y Parasitología * Facultad de Farmacia * Universidad Complutense de Madrid * Plaza Ramón y Cajal s / n * Madrid 28040 * Spain</mods:affiliation>
        <mods:nameIdentifier type="email">pponce@ucm.es</mods:nameIdentifier>
    </mods:name>
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    <mods:relatedItem type="host">
        <mods:titleInfo>
            <mods:title>Zoological Journal of the Linnean Society</mods:title>
        </mods:titleInfo>
        <mods:part>
            <mods:date>2024</mods:date>
            <mods:detail type="pubDate">
                <mods:number>2023-11-03</mods:number>
            </mods:detail>
            <mods:detail type="volume">
                <mods:number>201</mods:number>
            </mods:detail>
            <mods:detail type="issue">
                <mods:number>2</mods:number>
            </mods:detail>
            <mods:extent unit="page">
                <mods:start>269</mods:start>
                <mods:end>289</mods:end>
            </mods:extent>
        </mods:part>
    </mods:relatedItem>
    <mods:location>
        <mods:url>http://dx.doi.org/10.1093/zoolinnean/zlad150</mods:url>
    </mods:location>
    <mods:classification>journal article</mods:classification>
    <mods:identifier type="DOI">10.1093/zoolinnean/zlad150</mods:identifier>
    <mods:identifier type="ISSN">0024-4082</mods:identifier>
    <mods:identifier type="Zenodo-Dep">13220219</mods:identifier>
    <mods:identifier type="ZooBank">672E17B-149D-466C-9A6E-26C6DD65A7B6Corresponding</mods:identifier>
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<table id="DF1B661C7568946AF08522E8FC026BA9"><caption box="[129,945,1455,1479]" pageId="12" pageNumber="281" startId="12.[129,184,1455,1479]" targetType="table"><emphasis bold="true" box="[129,207,1455,1479]" pageId="12" pageNumber="281">Table 5.</emphasis> Types of short tandem repeats (STRs) found in the sequences from opalinids.</caption><thead><tr id="355434D675686B99F085229AFA716B98"><th box="[129,266,1501,1526]" id="76855DAA75686B99F085229AFEB96B98" pageId="12" pageNumber="281"><emphasis bold="true" box="[129,180,1502,1526]" id="B910EA867568946AF0852299FF076B98" pageId="12" pageNumber="281">Type</emphasis></th><th box="[402,712,1501,1526]" id="76855DAA75686B99F196229AFD7B6B98" pageId="12" pageNumber="281"><emphasis bold="true" box="[402,551,1501,1525]" id="B910EA867568946AF196229AFD946B9B" pageId="12" pageNumber="281">Characteristics</emphasis></th><th box="[767,1120,1501,1526]" id="76855DAA75686B99F2FB229AFBD36B98" pageId="12" pageNumber="281"><emphasis bold="true" box="[767,854,1502,1526]" id="B910EA867568946AF2FB2299FCE56B98" pageId="12" pageNumber="281">Example</emphasis></th><th box="[1208,1474,1501,1526]" id="76855DAA75686B99F4BC229AFA716B98" pageId="12" pageNumber="281"><emphasis bold="true" box="[1208,1410,1501,1525]" id="B910EA867568946AF4BC229AFA316B9B" pageId="12" pageNumber="281">Sequence (position)</emphasis></th></tr></thead><tbody><tr id="355434D675686B99F085214AFA71684B"><th box="[129,266,1549,1573]" id="76855DAA75686B99F085214AFEB9684B" pageId="12" pageNumber="281">Direct</th><td box="[402,712,1549,1573]" id="76855DAA75686B99F196214AFD7B684B" pageId="12" pageNumber="281">Head to tail</td><td id="76855DAA75686B99F2FB214AFBD3684B"/><td id="76855DAA75686B99F4BC214AFA71684B"/></tr><tr id="355434D675686B99F0852168FA71680B"><th box="[129,266,1583,1637]" id="76855DAA75686B99F0852168FEB9680B" pageId="12" pageNumber="281">Perfect</th><td box="[402,712,1583,1637]" id="76855DAA75686B99F1962168FD7B680B" pageId="12" pageNumber="281">All units equal</td><td box="[767,1120,1583,1637]" id="76855DAA75686B99F2FB2168FBD3680B" pageId="12" pageNumber="281">TAATAATAATAATAA</td><td box="[1208,1474,1583,1637]" id="76855DAA75686B99F4BC2168FA71680B" pageId="12" pageNumber="281"><taxonomicName _authorityPlausibility="0.9999269" _evidence="catalogs" _step="species1" authority="MN" authorityName="MN" class="Heterotrichea" family="Nyctotheridae" genus="Opalina" id="4C644D177568946AF4BC2168FB46680A" kingdom="Chromista" order="Heterotrichida" pageId="12" pageNumber="281" phylum="Ciliophora" rank="species" species="undulata"><emphasis box="[1208,1368,1583,1607]" id="B910EA867568946AF4BC2168FAEB6829" italics="true" pageId="12" pageNumber="281">Opalina undulata</emphasis> MN</taxonomicName> 638758 (3423)</td></tr><tr id="355434D675686B99F0852129FA7168CA"><th box="[129,266,1646,1700]" id="76855DAA75686B99F0852129FEB968CA" pageId="12" pageNumber="281">Imperfect</th><td box="[402,712,1646,1700]" id="76855DAA75686B99F1962129FD7B68CA" pageId="12" pageNumber="281">With substitutions and/or indels</td><td box="[767,1120,1646,1700]" id="76855DAA75686B99F2FB2129FBD368CA" pageId="12" pageNumber="281">AGTTT ATTTT AATTT</td><td box="[1208,1474,1646,1700]" id="76855DAA75686B99F4BC2129FA7168CA" pageId="12" pageNumber="281"><taxonomicName box="[1208,1328,1646,1670]" family="Opalinidae" genus="Zelleriella" id="4C644D177568946AF4BC2129FA8368E8" kingdom="Chromista" pageId="12" pageNumber="281" phylum="Bigyra" rank="species" species="undetermined"><emphasis box="[1208,1297,1646,1670]" id="B910EA867568946AF4BC2129FAA268E8" italics="true" pageId="12" pageNumber="281">Zelleriella</emphasis> sp.</taxonomicName> MN638763 (1762)</td></tr><tr id="355434D675686B99F08521E9FA71688D"><th box="[129,266,1710,1763]" id="76855DAA75686B99F08521E9FEB9688D" pageId="12" pageNumber="281">Overlapped</th><td box="[402,712,1710,1763]" id="76855DAA75686B99F19621E9FD7B688D" pageId="12" pageNumber="281">STR includes bases</td><td box="[767,1120,1710,1763]" id="76855DAA75686B99F2FB21E9FBD3688D" pageId="12" pageNumber="281">TTTA[T ATTAT]/ [TAT TAT] TAT</td><td box="[1208,1474,1710,1763]" id="76855DAA75686B99F4BC21E9FA71688D" pageId="12" pageNumber="281"><taxonomicName _authorityPlausibility="0.9999269" _evidence="catalogs" _step="species1" authority="MN" authorityName="MN" family="Opalinidae" genus="Protoopalina" higherTaxonomySource="GBIF" id="4C644D177568946AF4BC21E9FB47688D" kingdom="Chromista" pageId="12" pageNumber="281" phylum="Bigyra" rank="species" species="limnocharis"><emphasis box="[1208,1435,1710,1734]" id="B910EA867568946AF4BC21E9FA2868A8" italics="true" pageId="12" pageNumber="281">Protoopalina limnocharis</emphasis> MN</taxonomicName> 638759 (1493/1497)</td></tr><tr id="355434D675686B99F08521AAFA71696B"><th box="[129,266,1773,1797]" id="76855DAA75686B99F08521AAFEB9696B" pageId="12" pageNumber="281">Inverted</th><td box="[402,712,1773,1797]" id="76855DAA75686B99F19621AAFD7B696B" pageId="12" pageNumber="281">Head to head</td><td id="76855DAA75686B99F2FB21AAFBD3696B"/><td id="76855DAA75686B99F4BC21AAFA71696B"/></tr><tr id="355434D675686B99F0852048FA71692A"><th box="[129,266,1807,1860]" id="76855DAA75686B99F0852048FEB9692A" pageId="12" pageNumber="281">Perfect</th><td box="[402,712,1807,1860]" id="76855DAA75686B99F1962048FD7B692A" pageId="12" pageNumber="281">All units equal</td><td box="[767,1120,1807,1860]" id="76855DAA75686B99F2FB2048FBD3692A" pageId="12" pageNumber="281">TTTATAATATTT</td><td box="[1208,1474,1807,1860]" id="76855DAA75686B99F4BC2048FA71692A" pageId="12" pageNumber="281"><taxonomicName _authorityPlausibility="0.9999269" _evidence="catalogs" _step="species1" authority="MN" authorityName="MN" class="Heterotrichea" family="Nyctotheridae" genus="Opalina" id="4C644D177568946AF4BC2048FB47692A" kingdom="Chromista" order="Heterotrichida" pageId="12" pageNumber="281" phylum="Ciliophora" rank="species" species="triangulata"><emphasis box="[1208,1388,1807,1831]" id="B910EA867568946AF4BC2048FADF6949" italics="true" pageId="12" pageNumber="281">Opalina triangulata</emphasis> MN</taxonomicName> 638762 (470)</td></tr><tr id="355434D675686B99F0852009FA7169ED"><th box="[129,266,1870,1923]" id="76855DAA75686B99F0852009FEB969ED" pageId="12" pageNumber="281">Imperfect</th><td box="[402,712,1870,1923]" id="76855DAA75686B99F1962009FD7B69ED" pageId="12" pageNumber="281">With substitutions and/or indels</td><td box="[767,1120,1870,1923]" id="76855DAA75686B99F2FB2009FBD369ED" pageId="12" pageNumber="281">TTATTATTATTATTTTTTTTATTA(-) TATTATT</td><td box="[1208,1474,1870,1923]" id="76855DAA75686B99F4BC2009FA7169ED" pageId="12" pageNumber="281"><taxonomicName _authorityPlausibility="0.9999269" _evidence="catalogs" _step="species1" authority="MN" authorityName="MN" class="Heterotrichea" family="Nyctotheridae" genus="Opalina" id="4C644D177568946AF4BC2009FB4769ED" kingdom="Chromista" order="Heterotrichida" pageId="12" pageNumber="281" phylum="Ciliophora" rank="species" species="japonica"><emphasis box="[1208,1363,1870,1894]" id="B910EA867568946AF4BC2009FAE0690B" italics="true" pageId="12" pageNumber="281">Opalina japonica</emphasis> MN</taxonomicName> 638764 (73)</td></tr></tbody></table></document>