Transcriptional response of giant reed (Arundo donax L.) low ecotype to long-term salt stress by unigene-based RNAseq Author Sicilia, Angelo Author Santoro, Danilo Fabrizio Author Testa, Giorgio Author Cosentino, Salvatore Luciano Author Piero, Angela Roberta Lo text Phytochemistry 2020 112436 2020-09-30 177 1 13 http://dx.doi.org/10.1016/j.phytochem.2020.112436 journal article 10.1016/j.phytochem.2020.112436 1873-3700 8295776
Table 3 List of DEGs related to salt stress response identified in G34-S3 vs G34-CK comparison.
Cluster IDDatabase descriptionPercent identityEvaluelog2 fold change
Salt sensory and signaling mechanisms
14027.182899Oryza sativa subsp. J aponica Group CBL-interacting protein kinase 1 (CIPK1–SOS2 like), (Nt ID: XM_015766590.1)93.33%4e-23+Inf*
14027.155903Phragmites australis pcnhx1 mRNA for putative Na+/H+ antiporter (NHX1), (Nt ID: AB211145.1)93.40%3e-54−12.753
14027.181583Arabidopsis thaliana Sodium /hydrogen exchanger 2 (NHX2), (Swissprot ID: Q56XP4)77.78%8e-79−11.093
14027.230649Oryza sativa probable cation transporter HKT6 (Nr ID: XP_015626193.1)71.87%1e-154−15,51
Hormone regulation of salt stress response
14027.99729Saccharum arundinaceum 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) (Nr ID: ABM74187.1)91.46%1e-122+18.071
14027.223665Arabidopsis thaliana serine/threonine-protein kinase CTR1, (Swissprot ID: Q05609)89.36%1e-02+Inf*
14027.220930Setaria italica cytochrome P450 710A1-like (Nt ID: XM_004968550.2)87.92%3e-147+42.918
ROS scavenging regulatory mechanisms
14027.54848Setaria italica glutathione transferase GST 23-like, (Nr ID: XP_004966104.1)79.46%2e-57+16.425
14027.156319Setaria italica superoxide dismutase [Fe] 2, chloroplastic-like, (Nt ID: XM_004964461.2)93.24%3e-86- 10.398
14027.223022Setaria italica malate dehydrogenase, chloroplastic (MDH), (Nt ID: XM_012847145.2)97.50%3e-170+11.012
14027.169726Setaria italica NADP-dependent malic enzyme, chloroplastic (Nr ID: XP_004960887.1)81.69%3e-154+15,508
Osmolyte biosynthesis
14027.146844Setaria italica delta-1-pyrroline-5-carboxylate synthase (P5CS) (Nt ID: XM_004961829.3)91.92%6e-168+28.543
14027.160267Setaria italica polyamine oxidase 2 (Nt ID: XM_004960065.2)95.00%5e-137+20.021
Photosynthesis and photorespiration
14027.153819Pisum sativum RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Swissprot ID: P08926)74.89%4e-110- 39.871
14027.193818Setaria italica peroxisomal (S)-2-hydroxy-acid oxidase (Nt ID: XM_004958250.2)92.51%5e-156+14.194
14027.158029Setaria italica phosphoenolpyruvate carboxylase kinase (PEPC kinase) (Nr ID: XP_004976235.1)84.05%2e-127- 32.125
14027.157747Oryza sativa subsp. J aponica Group Ribulose bisphosphate carboxylase small chain A (Swissprot ID: Q0INY7)94.59%3e-20−10.522