Transcriptional response of giant reed (Arundo donax L.) low ecotype to long-term salt stress by unigene-based RNAseq Author Sicilia, Angelo Author Santoro, Danilo Fabrizio Author Testa, Giorgio Author Cosentino, Salvatore Luciano Author Piero, Angela Roberta Lo text Phytochemistry 2020 112436 2020-09-30 177 1 13 http://dx.doi.org/10.1016/j.phytochem.2020.112436 journal article 10.1016/j.phytochem.2020.112436 1873-3700 8295776

Table 5 – Comparison of DEGs related to KEGG pathways identi fi ed in G 34 - S 3 vs G 34 - CK, G 2- S 3 vs G 2 - CK and G 2- S 4 vs G 2 -CK sample sets.

Cluster ID	Database description	Percent identity	Evalue	log 2 fold change	log 2 fold change	log 2 fold change
				G 34 _ S 3 vs	G 2 _ S 3 vs	G 2 _ S 4 vs
				G 34 _ CK	G 2 _ CK	G 2 _CK
Carbon metabolism
14027.261590	Setaria italica hexokinase- 7 (HXK 7), (Nt ID: XM _ 004960833.3)	92.50 %	2 e- 162	+24.834	+ 17.252	+ 34.025
14027.261776	Setaria italica ATP-dependent 6 - phosphofructokinase 2 (PFK2), (Nr ID: XP _ 004975916.1)	79.82 %	2 e- 54	+ 44.432	–*	+ 24.309
14027.70763	Setaria italica glyceraldehyde- 3 -phosphate dehydrogenase 3 (GAPCP 3), (Nr ID: XP _010930058.1)	75,83 %	2 e- 73	+ 28.263	+ 28.878	+ 49.616
14027.30626	Setaria italica 2,3- bisphosphoglycerate-independent phosphoglycerate mutase (PFAM ID: PF 10143)	67.57 %	2 e- 10	+ Inf**	–	+ Inf **
14027.52780	Ricinus communis pyruvate kinase isozyme A, chloroplastic (Swissprot ID: Q 43117)	66.85 %	4 e- 179	- Inf ***	–	−16.659
14027.212884	Oryza brachyantha pyruvate dehydrogenase (acetyl-transferring) kinase (Nr ID: XP _006658015.1)	94.07 %	4e- 88	−18.890	–	–
14027.146727	Arabidopsis thaliana dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial	70.49 %	3e- 180	+ 12.376	–	+ 14.354
	(Swissprot ID: Q 8 RWN 9)
14027.202505	Setaria italica citrate synthase 4 (CSY 4), (Nt ID: XM _ 004951531.1)	95.00 %	9 e- 149	+ 11.237	–	+ 11.496
14027.155073	Setaria italica isocitrate dehydrogenase , mitochondrial (Nt ID: XM _ 004967640.3)	97.49 %	2e- 175	+ 19.652	–	–
14027.190285	Zea mays succinate dehydrogenase fl avoprotein subunit, mitochondrial (SDH) (Nt ID: EU 970939.1)	97.89 %	2e- 173	+ 12.117	–	+ 26.218
14027.187091	Setaria italica fumarate hydratase 1, mitochondrial (Nt ID: XM _ 004984384.2)	97.50 %	2e- 145	+ 17.773	–	+ 18.953
14027.150469	Setaria italica phosphoenolpyruvate carboxykinase (PEPCK), (Nr ID: XP _ 004984967.1)	100.00 %	3 e- 93	+ 26.480	+ 36.401	+ 36.731
Starch and sucrose metabolism
14027.194053	Setaria italica 1,4 - alpha-glucan-branching enzyme 2 (Nt ID: XM _ 004952572.1)	60.11%	1 e- 60	+ 17.373	–	+ 33.943
14027.222866	Setaria italica glucose-1 - phosphate adenylyltransferase large subunit, (Nr ID: XP _006654841.1)	62.22 %	6e- 145	+ 23.167	–	+ 38.907
14027.204584	Setaria italica alpha-1,4 glucan phosphorylase (Nr ID: XP _004981704.1)	93.51 %	4 e-98	+ 10.353	–	+ 20.785