Phylogeography of Crocidura suaveolens (Mammalia: Soricidae) in Iberia has been shaped by competitive exclusion by C. russula Author Biedma, Luis Author Román, Jacinto Author Calzada, Javier Author Friis, Guillermo Author Godoy, José A text Biological Journal of the Linnean Society 2018 2017-10-05 123 1 81 95 http://academic.oup.com/biolinnean/article/123/1/81/4760442 journal article 10.1093/biolinnean/blx126 0024-4082 7817897

Table 1. Genetic diversity and demographic statistics for lineages of clade IV of the Crocidura suaveolens group

		Genetic diversity					Mismatch distributional analysis			Neutrality test
N, sample size; h, number of haplotypes; S, number of polymorphic sites; H, haplotype diversity; Pi, nucleotide diversity (expressed as percentages, i.e. 0.001 = 0.1%); K, average number of pairwise nucleotide differences. HRI, Harpending’s raggedness index; n.a., not available (for lineages with a small number of samples); SSD, sum of square deviation. Tau is the mode of the curve of the mismatch distribution when a signal of demographic expansion is detected and it is proportional to the time since expansion. Values in bold show significant results for SSD, HRI, Tajima’s D, Fu and Li’s tests and R 2 statistics (P <0.05), and for Fu’s F S test (P <0.02). *Lineages including haplotypes downloaded from GenBank obtained from an unknown number of samples (assumed here to be one).
Lineage	N	h	S	H	Pi	K	SSD	HRI	Tau	Tajima D	Fu’s F S	Fu and Li’s D	Fu and Li’s F	R 2
A1*	8	7	26	0.964	1.026	9.75	0.034 (P = 0.465)	0.070 (P = 0.588)	7.607	−0.146 (P = 0.448)	−0.505 (P = 0.304)	−0.420 (P > 0.10)	−0.413 (P > 0.10)	0.1428 (P = 0.211)
A2*	3	3	15	1.000	1.026	10	0.000	0.000	0	0.000 (P = 0.689)	1.139 (P = 0.478)	n.a.	n.a.	n.a.
B	50	22	41	0.948	0.693	5.55	0.010 (P = 0.211)	0.026 (P = 0.227)	6.515	−1.342 (P = 0.06)	−6.046 (P = 0.034)	−0.075 (P > 0.10)	−0.592 (P > 0.10)	0.0672 (P = 0.084)
C1	14	4	3	0.396	0.063	0.429 0.005 (P = 0.684)		0.168 (P = 0.63)	0.505	−1.671 ( P = 0.026)	−2.288 ( P = 0.005)	−2.091 (0.10> P > 0.05)	−2.255 (0.10> P > 0.05)	0.1368 (P = 0.138)
C2*	3	2	5	0.667	0.402	3.333 0.392 (P = 0.068)		1.000 (P = 0.545)	5.881	0.000 (P = 0.782)	2.357 (P = 0.824)	n.a.	n.a.	n.a.
C3	30	4	4	0.306	0.049	0.453 0.005 (P = 0.494)		0.286 (P = 0.566)	3	−1.416 (P = 0.07)	−1.436 (P = 0.087)	−0.608 (P > 0.10)	−1.050 (P > 0.10)	0.0631 ( P = 0.000)
C4	23	3	2	0.502	0.071	0.561 0.013 (P = 0.272)		0.154 (P = 0.313)	0.697	0.080 (P = 0.622)	0.109 (P = 0.452)	−0.646 (P > 0.10)	−0.514 (P > 0.10)	0.1564 (P = 0.563)
Total	131	45	95	0.936	1.214	9.589 0.008 (P = 0.547)		0.011 (P = 0.497)	13.617	−1.441 (P = 0.054)	−11.101 (P = 0.028)	−1.889 (P > 0.10)	−2.123 (0.10> P > 0.05)	0.0447 ( P = 0.037)